Index

B

build_entity_points_from_expression() (in module cellgps)

C

circle_heatmap() (in module cellgps) compute_cophenetic_distances_from_adata() (in module cellgps) compute_cophenetic_distances_from_df() (in module cellgps) compute_cophenetic_distances_from_df_memory_opt() (in module cellgps) compute_cophenetic_from_distance_matrix() (in module cellgps)

compute_entity_structuremap() (in module cellgps) compute_entity_to_cell_topology() (in module cellgps) compute_pathway_activity_matrix() (in module cellgps) compute_searcher_findee_distance_matrix_from_df() (in module cellgps) compute_weighted_cophenetic_distances_from_df() (in module cellgps) compute_weighted_searcher_findee_distance_matrix_from_df() (in module cellgps)

G

generate_cluster_distance_heatmap_from_adata() (in module cellgps)

generate_cluster_distance_heatmap_from_df() (in module cellgps) generate_cluster_distance_heatmap_from_path() (in module cellgps)

L

ligand_receptor_target_consistency() (in module cellgps) ligand_receptor_topology_analysis() (in module cellgps)

load_xenium_data() (in module cellgps) load_xenium_table_bundle() (in module cellgps)

M

merge_xenium_clusters_into_adata() (in module cellgps)

P

pathway_topology_analysis() (in module cellgps)

pick_batch_size() (in module cellgps) plot_cophenetic_heatmap() (in module cellgps)

R

read_visium_bin() (in module cellgps)